- Systems Biology Markup Language (SBML)
- Used mainly for representation of pathways and mathematical models. Currently (Feb 2008) best suited format for structured representation of mathematical modeling and simulations.
- Proteomics standards Initiative - Molecular Interactions (PSI_MI)
- Designed for structured representation of experimental evidence information, suct as molecular interactions data.
- Biological Pathway eXchange (BioPAX)
- Integrates PSI-MI within a pathway representation format and provides mechanism to store addition information.
March 20, 2012
Biological Pathway Standard Format
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