June 13, 2013

Research articles on automatic pathway construction


Research articles on automatic pathway construction:
  1. Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information (2011, citation:8)
  2. Biological Pathway Extension Using Microarray Gene Expression Data (2008, citation:1)
  3. Microarray analysis of gene expression: considerations in data mining and statistical treatment (2006, citation: 66)
  4. Genomic analysis of metabolic pathway gene expression in mice (2005, citation: 67)
  5. PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis (2003, citation: 54)
  6. Bayesian Consensus Pathway Construction and Expansion Using Microarray Gene Expression Data (From NCBI)
  7. Biological Networks (Software from UCSD)
  8. Reconstructing dynamic gene regulatory networks from sample-based transcriptional data (2012, citation:3)
  9. Reconstructing regulatory networks from the dynamic plasticity of gene expression by mutual information (2013, citation:0) 
  10. A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression data (2012, citation:1) 
  11. An integrative genomics approach to the reconstruction of gene networks in segregating populations (2004, citation:135
  12. Integrating genetic and gene expression data: application to cardiovascular and metabolic traits in mice () 
  13. Uncovering regulatory pathways that affect hematopoietic stem cell function using 'genetical genomics' (Nature Genetics, 2005, citation:333) 
  14. Inferring gene transcriptional modulatory relations: a genetical genomics approach (2005, citation:77) 
  15. Complex trait analysis of gene expression uncovers polygenic and pleiotropic networks that modulate nervous system function (Nature Genetics, 2005, citation:515) 
  16. Integrated transcriptional profiling and linkage analysis for identification of genes underlying disease (Nature Genetics, 2005, citation:410) 
  17. An integrative genomics approach to infer causal associations between gene expression and disease (Nature Genetics, 2005, citation:544)

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